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  "Title": "Geometric Morphometric Analyses of 2D and 3D Landmark Data",
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  "Description": "Read and manipulate landmark data, generate shape\nvariables via Procrustes analysis for points, curves and\nsurfaces, perform shape analyses, and provide graphical\ndepictions of shapes and patterns of shape variation.",
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  "_exports": [
    "arrayspecs",
    "bilat.symmetry",
    "build.template",
    "combine.subsets",
    "compare.CR",
    "compare.evol.rates",
    "compare.multi.evol.rates",
    "compare.physignal.z",
    "compare.pls",
    "compare.ZVrel",
    "coords.subset",
    "define.links",
    "define.modules",
    "define.sliders",
    "digit.curves",
    "digit.fixed",
    "digitize2d",
    "digitsurface",
    "editTemplate",
    "estimate.missing",
    "extended.pgls",
    "findMeanSpec",
    "fixed.angle",
    "geomorph.data.frame",
    "globalIntegration",
    "gm.measurement.error",
    "gm.prcomp",
    "gpagen",
    "gridPar",
    "integration.test",
    "integration.Vrel",
    "interlmkdist",
    "make_ggplot",
    "modularity.test",
    "morphol.disparity",
    "mshape",
    "phylo.integration",
    "phylo.modularity",
    "physignal",
    "physignal.eigen",
    "physignal.z",
    "picknplot.shape",
    "plotAllometry",
    "plotAllSpecimens",
    "plotOutliers",
    "plotRefToTarget",
    "plotspec",
    "procD.lm",
    "procD.pgls",
    "read.morphologika",
    "read.ply",
    "readland.fcsv",
    "readland.nts",
    "readland.shapes",
    "readland.tps",
    "readmulti.nts",
    "readmulti.tps",
    "rotate.coords",
    "shape.predictor",
    "shapeHulls",
    "two.b.pls",
    "two.d.array",
    "warpRefMesh",
    "warpRefOutline",
    "writeland.tps"
  ],
  "_datasets": [
    {
      "name": "hummingbirds",
      "title": "Landmark data from hummingbird bills (includes sliding semilandmarks on curves)",
      "object": "hummingbirds",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "larvalMorph",
      "title": "Head and tail shapes of larval salamanders",
      "object": "larvalMorph",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "lizards",
      "title": "Dorsal head shape data of lizards",
      "object": "lizards",
      "class": [
        "geomorph.data.frame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "mosquito",
      "title": "Landmarks on mosquito wings",
      "object": "mosquito",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "plethodon",
      "title": "Landmark data from Plethodon salamander heads",
      "object": "plethodon",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "plethShapeFood",
      "title": "Head shape and food use data from Plethodon salamanders",
      "object": "plethShapeFood",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "plethspecies",
      "title": "Head shape and phylogenetic relationships for several Plethodon salamander species",
      "object": "plethspecies",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "pupfish",
      "title": "Landmarks on pupfish",
      "object": "pupfish",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pupfish.ws",
      "title": "Landmarks on pupfish",
      "object": "pupfish.ws",
      "class": [
        "geomorph.data.frame"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "ratland",
      "title": "Landmark data from dataset rat",
      "object": "ratland",
      "class": [
        "array"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "scallopPLY",
      "title": "3D scan of a scallop shell from a .ply file in mesh3d format",
      "object": "scallopPLY",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "scallops",
      "title": "Landmark data from scallop shells",
      "object": "scallops",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "geomorph-package",
      "title": "Geometric morphometric analyses for 2D/3D data",
      "topics": [
        "geomorph-package",
        "geomorph"
      ]
    },
    {
      "page": "arrayspecs",
      "title": "Convert landmark data matrix into array (p x k x n)",
      "topics": [
        "arrayspecs"
      ]
    },
    {
      "page": "bilat.symmetry",
      "title": "Analysis of bilateral symmetry",
      "topics": [
        "bilat.symmetry"
      ]
    },
    {
      "page": "build.template",
      "title": "Deprecated functions in geomorph",
      "topics": [
        "build.template"
      ]
    },
    {
      "page": "combine.subsets",
      "title": "Combine separate landmark configurations",
      "topics": [
        "combine.subsets"
      ]
    },
    {
      "page": "compare.CR",
      "title": "Comparisons of Effect Sizes from Modularity Analyses",
      "topics": [
        "compare.CR"
      ]
    },
    {
      "page": "compare.evol.rates",
      "title": "Comparing net rates of shape evolution on phylogenies",
      "topics": [
        "compare.evol.rates"
      ]
    },
    {
      "page": "compare.multi.evol.rates",
      "title": "Comparing net rates of evolution among traits on phylogenies",
      "topics": [
        "compare.multi.evol.rates"
      ]
    },
    {
      "page": "compare.physignal.z",
      "title": "Comparisons of Phylogenetic Signal Effect Sizes",
      "topics": [
        "compare.physignal.z"
      ]
    },
    {
      "page": "compare.pls",
      "title": "Comparisons of Effect Sizes from Partial Least Squares",
      "topics": [
        "compare.pls"
      ]
    },
    {
      "page": "compare.ZVrel",
      "title": "Comparisons of Effect Sizes from Overall Integration Analyses",
      "topics": [
        "compare.ZVrel"
      ]
    },
    {
      "page": "coords.subset",
      "title": "Subset landmark coordinates via a factor",
      "topics": [
        "coords.subset"
      ]
    },
    {
      "page": "define.links",
      "title": "Define links between landmarks",
      "topics": [
        "define.links"
      ]
    },
    {
      "page": "define.modules",
      "title": "Define modules (landmark partitions)",
      "topics": [
        "define.modules"
      ]
    },
    {
      "page": "define.sliders",
      "title": "Select points to \"slide\" along curves",
      "topics": [
        "define.sliders"
      ]
    },
    {
      "page": "digit.curves",
      "title": "Calculate semilandmarks along a curve",
      "topics": [
        "digit.curves"
      ]
    },
    {
      "page": "digit.fixed",
      "title": "This function has been deprecated, as RGL no longer",
      "topics": [
        "digit.fixed"
      ]
    },
    {
      "page": "digitize2d",
      "title": "Digitize 2D landmarks on .jpg files",
      "topics": [
        "digitize2d"
      ]
    },
    {
      "page": "digitsurface",
      "title": "This function has been deprecated.",
      "topics": [
        "digitsurface"
      ]
    },
    {
      "page": "editTemplate",
      "title": "This function has been deprecated.",
      "topics": [
        "editTemplate"
      ]
    },
    {
      "page": "estimate.missing",
      "title": "Estimate locations of missing landmarks",
      "topics": [
        "estimate.missing"
      ]
    },
    {
      "page": "extended.pgls",
      "title": "Extended Phylogenetic ANOVA/regression for Procrustes shape variables",
      "topics": [
        "extended.pgls"
      ]
    },
    {
      "page": "findMeanSpec",
      "title": "Identify specimen closest to the mean of a set of Procrustes shape variables",
      "topics": [
        "findMeanSpec"
      ]
    },
    {
      "page": "fixed.angle",
      "title": "Rotate a subset of 2D landmarks to common articulation angle",
      "topics": [
        "fixed.angle"
      ]
    },
    {
      "page": "geomorph.data.frame",
      "title": "Create a data frame with shape data",
      "topics": [
        "geomorph.data.frame"
      ]
    },
    {
      "page": "globalIntegration",
      "title": "Quantify global integration relative to self-similarity",
      "topics": [
        "globalIntegration"
      ]
    },
    {
      "page": "gm.measurement.error",
      "title": "This function is a wrapper for the function measurement.error in RRPP",
      "topics": [
        "gm.measurement.error"
      ]
    },
    {
      "page": "gm.prcomp",
      "title": "Principal and phylogenetically-aligned components analysis of shape data",
      "topics": [
        "gm.prcomp"
      ]
    },
    {
      "page": "gpagen",
      "title": "Generalized Procrustes analysis of points, curves, and surfaces",
      "topics": [
        "gpagen"
      ]
    },
    {
      "page": "gridPar",
      "title": "Set up parameters for grids, points, and links in plotRefToTarget",
      "topics": [
        "gridPar"
      ]
    },
    {
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      "page": "mshape",
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      "title": "Quantify phylogenetic morphological integration between two or more sets of variables under Brownian motion",
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      "page": "phylo.modularity",
      "title": "Evaluate the degree of phylogenetic modular signal in Procrustes shape variables",
      "topics": [
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      "page": "physignal",
      "title": "Assessing phylogenetic signal in Procrustes shape variables",
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    },
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      "page": "physignal.eigen",
      "title": "Assessing dimensions of phylogenetic signal in Procrustes shape variables",
      "topics": [
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      "page": "physignal.z",
      "title": "Assessing phylogenetic signal effect size in Procrustes shape variables",
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      "page": "picknplot.shape",
      "title": "Pick points in geomorph scatterplots to visualize shape variation",
      "topics": [
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    },
    {
      "page": "plethodon",
      "title": "Landmark data from Plethodon salamander heads",
      "topics": [
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    },
    {
      "page": "plethShapeFood",
      "title": "Head shape and food use data from Plethodon salamanders",
      "topics": [
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      ]
    },
    {
      "page": "plethspecies",
      "title": "Head shape and phylogenetic relationships for several Plethodon salamander species",
      "topics": [
        "plethspecies"
      ]
    },
    {
      "page": "plot.bilat.symmetry",
      "title": "Plot Function for geomorph",
      "topics": [
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      ]
    },
    {
      "page": "plot.CR",
      "title": "Plot Function for geomorph",
      "topics": [
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    },
    {
      "page": "plot.CR.phylo",
      "title": "Plot Function for geomorph",
      "topics": [
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    {
      "page": "plot.evolrate",
      "title": "Plot Function for geomorph",
      "topics": [
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      "page": "plot.gm.prcomp",
      "title": "Plot Function for geomorph",
      "topics": [
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    {
      "page": "plot.gpagen",
      "title": "Plot Function for geomorph",
      "topics": [
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      "page": "plot.mshape",
      "title": "Plot Function for geomorph",
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      "page": "plot.physignal",
      "title": "Plot Function for geomorph",
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      "page": "plot.physignal.eigen",
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      "page": "plotAllometry",
      "title": "Plotting to assist visualization of shape-size covariation (allometry)",
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    },
    {
      "page": "plotAllSpecimens",
      "title": "Plot landmark coordinates for all specimens",
      "topics": [
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      "page": "plotOutliers",
      "title": "Find potential outliers",
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      "page": "plotRefToTarget",
      "title": "Plot shape differences between a reference and target specimen",
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      "page": "plotspec",
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      "title": "Print/Summary function for geomorph",
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      "title": "Print/Summary function for geomorph",
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      "page": "print.gpagen",
      "title": "Print/Summary Function for geomorph",
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      "page": "print.morphol.disparity",
      "title": "Print/Summary Function for geomorph",
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      "title": "Print/Summary Function for geomorph",
      "topics": [
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      "page": "print.physignal.eigen",
      "title": "Print/Summary Function for geomorph",
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      "title": "Print/Summary Function for geomorph",
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      "title": "Read landmark data from Morphologika file(s)",
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      "page": "summary.CR",
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      "page": "summary.CR.phylo",
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      "page": "summary.evolrate",
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